Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4760900..4760987 | Replicon | chromosome |
| Accession | NZ_CP076386 | ||
| Organism | Dickeya dadantii strain S3-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4760907..4760987 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4760900..4760987 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KNV89_RS20845 (KNV89_20845) | 4756788..4757903 | - | 1116 | WP_216282824.1 | ATP-binding protein | - |
| KNV89_RS20850 (KNV89_20850) | 4757896..4759020 | - | 1125 | WP_216282825.1 | FIST N-terminal domain-containing protein | - |
| KNV89_RS20855 (KNV89_20855) | 4759491..4759604 | + | 114 | Protein_4085 | IS5/IS1182 family transposase | - |
| KNV89_RS20860 (KNV89_20860) | 4759642..4760706 | + | 1065 | WP_216282826.1 | aminopeptidase | - |
| - | 4760900..4760987 | + | 88 | - | - | Antitoxin |
| - | 4760907..4760987 | - | 81 | - | - | Toxin |
| KNV89_RS20865 (KNV89_20865) | 4761157..4761495 | - | 339 | WP_216282827.1 | YebY family protein | - |
| KNV89_RS20870 (KNV89_20870) | 4762014..4762457 | + | 444 | WP_216284696.1 | hypothetical protein | - |
| KNV89_RS20875 (KNV89_20875) | 4762807..4763055 | + | 249 | WP_216282828.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| KNV89_RS20880 (KNV89_20880) | 4763172..4764914 | - | 1743 | WP_216282829.1 | ABC transporter permease subunit | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T205607 NZ_CP076386:c4760987-4760907 [Dickeya dadantii]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 88 bp
>AT205607 NZ_CP076386:4760900-4760987 [Dickeya dadantii]
AACACATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATT
AACACATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATT
