Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2093624..2093895 | Replicon | chromosome |
| Accession | NZ_CP076276 | ||
| Organism | Escherichia coli strain SA31-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2093662..2093765 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2093624..2093895 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7A21_RS10310 | 2090781..2092220 | + | 1440 | WP_257114967.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A7A21_RS10315 | 2092338..2092574 | + | 237 | WP_001295499.1 | YebV family protein | - |
| A7A21_RS10320 | 2092679..2092870 | + | 192 | WP_000457842.1 | YebW family protein | - |
| A7A21_RS10325 | 2092871..2093527 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2093624..2093895 | + | 272 | - | - | Antitoxin |
| - | 2093662..2093765 | - | 104 | - | - | Toxin |
| A7A21_RS10330 | 2093923..2094264 | - | 342 | WP_000976472.1 | YebY family protein | - |
| A7A21_RS10335 | 2094277..2095149 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| A7A21_RS10340 | 2095153..2095527 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| A7A21_RS10345 | 2095666..2095896 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A7A21_RS10350 | 2095998..2096654 | + | 657 | WP_257114968.1 | carbon-nitrogen hydrolase family protein YobB | - |
| A7A21_RS10355 | 2096678..2097340 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205267 NZ_CP076276:c2093765-2093662 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205267 NZ_CP076276:2093624-2093895 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
