Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2133781..2134052 | Replicon | chromosome |
| Accession | NZ_CP076272 | ||
| Organism | Escherichia coli strain E21845/O/A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2133819..2133922 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2133781..2134052 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7A11_RS10545 | 2130938..2132377 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A7A11_RS10550 | 2132495..2132731 | + | 237 | WP_001295499.1 | YebV family protein | - |
| A7A11_RS10555 | 2132836..2133027 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A7A11_RS10560 | 2133028..2133684 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2133781..2134052 | + | 272 | - | - | Antitoxin |
| - | 2133819..2133922 | - | 104 | - | - | Toxin |
| A7A11_RS10565 | 2134080..2134421 | - | 342 | WP_000976472.1 | YebY family protein | - |
| A7A11_RS10570 | 2134434..2135306 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| A7A11_RS10575 | 2135310..2135684 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| A7A11_RS10580 | 2135823..2136053 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A7A11_RS10585 | 2136155..2136811 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| A7A11_RS10590 | 2136835..2137497 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205195 NZ_CP076272:c2133922-2133819 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205195 NZ_CP076272:2133781-2134052 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
