Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2038122..2038393 | Replicon | chromosome |
| Accession | NZ_CP076270 | ||
| Organism | Escherichia coli strain Ceylon31 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2038160..2038263 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2038122..2038393 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7A14_RS09945 | 2035279..2036718 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A7A14_RS09950 | 2036836..2037072 | + | 237 | WP_001295499.1 | YebV family protein | - |
| A7A14_RS09955 | 2037177..2037368 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A7A14_RS09960 | 2037369..2038025 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2038122..2038393 | + | 272 | - | - | Antitoxin |
| - | 2038160..2038263 | - | 104 | - | - | Toxin |
| A7A14_RS09965 | 2038421..2038762 | - | 342 | WP_000976472.1 | YebY family protein | - |
| A7A14_RS09970 | 2038775..2039647 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| A7A14_RS09975 | 2039651..2040025 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| A7A14_RS09980 | 2040164..2040394 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A7A14_RS09985 | 2040496..2041152 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| A7A14_RS09990 | 2041176..2041838 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205161 NZ_CP076270:c2038263-2038160 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205161 NZ_CP076270:2038122-2038393 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
