Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2102491..2102762 | Replicon | chromosome |
| Accession | NZ_CP076262 | ||
| Organism | Escherichia coli strain 0-4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2102529..2102632 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2102491..2102762 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7A18_RS10240 | 2099648..2101087 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A7A18_RS10245 | 2101205..2101441 | + | 237 | WP_001295499.1 | YebV family protein | - |
| A7A18_RS10250 | 2101546..2101737 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A7A18_RS10255 | 2101738..2102394 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2102491..2102762 | + | 272 | - | - | Antitoxin |
| - | 2102529..2102632 | - | 104 | - | - | Toxin |
| A7A18_RS10260 | 2102790..2103131 | - | 342 | WP_000976472.1 | YebY family protein | - |
| A7A18_RS10265 | 2103144..2104016 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| A7A18_RS10270 | 2104020..2104394 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| A7A18_RS10275 | 2104533..2104763 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A7A18_RS10280 | 2104865..2105521 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| A7A18_RS10285 | 2105545..2106207 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205064 NZ_CP076262:c2102632-2102529 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205064 NZ_CP076262:2102491-2102762 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
