Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2359853..2360124 | Replicon | chromosome |
| Accession | NZ_CP076241 | ||
| Organism | Escherichia coli O157:H7 strain Vac_07.1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2359983..2360086 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2359853..2360124 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKN65_RS12110 | 2356408..2357070 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| JKN65_RS12115 | 2357094..2357750 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JKN65_RS12120 | 2357852..2358082 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JKN65_RS12125 | 2358221..2358595 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| JKN65_RS12130 | 2358599..2359471 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| JKN65_RS12135 | 2359484..2359825 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2359853..2360124 | - | 272 | - | - | Antitoxin |
| - | 2359983..2360086 | + | 104 | - | - | Toxin |
| JKN65_RS12140 | 2360221..2360877 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| JKN65_RS12145 | 2360878..2361069 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JKN65_RS12150 | 2361174..2361410 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JKN65_RS12155 | 2361528..2362967 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2319829..2375965 | 56136 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204907 NZ_CP076241:2359983-2360086 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT204907 NZ_CP076241:c2360124-2359853 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
