Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 485271..485542 | Replicon | chromosome |
| Accession | NZ_CP075632 | ||
| Organism | Escherichia coli strain 2018-166 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 485401..485504 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 485271..485542 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFX80_RS02385 | 481826..482488 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JFX80_RS02390 | 482512..483168 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JFX80_RS02395 | 483270..483500 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JFX80_RS02400 | 483639..484013 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JFX80_RS02405 | 484017..484889 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| JFX80_RS02410 | 484902..485243 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 485271..485542 | - | 272 | - | - | Antitoxin |
| - | 485401..485504 | + | 104 | - | - | Toxin |
| JFX80_RS02415 | 485639..486295 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JFX80_RS02420 | 486296..486487 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JFX80_RS02425 | 486592..486828 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JFX80_RS02430 | 486946..488385 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204013 NZ_CP075632:485401-485504 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT204013 NZ_CP075632:c485542-485271 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
