Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2057306..2057577 | Replicon | chromosome |
| Accession | NZ_CP075469 | ||
| Organism | Escherichia coli strain NT1W22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2057436..2057539 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2057306..2057577 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGI32_RS10050 | 2053861..2054523 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| IGI32_RS10055 | 2054547..2055203 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| IGI32_RS10060 | 2055305..2055535 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IGI32_RS10065 | 2055674..2056048 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IGI32_RS10070 | 2056052..2056924 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| IGI32_RS10075 | 2056937..2057278 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2057306..2057577 | - | 272 | - | - | Antitoxin |
| - | 2057436..2057539 | + | 104 | - | - | Toxin |
| IGI32_RS10080 | 2057674..2058330 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| IGI32_RS10085 | 2058331..2058522 | - | 192 | WP_001338167.1 | YebW family protein | - |
| IGI32_RS10090 | 2058627..2058863 | - | 237 | WP_001338166.1 | YebV family protein | - |
| IGI32_RS10095 | 2058981..2060420 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203651 NZ_CP075469:2057436-2057539 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT203651 NZ_CP075469:c2057577-2057306 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
