Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2070492..2070763 | Replicon | chromosome |
| Accession | NZ_CP075462 | ||
| Organism | Escherichia coli strain NT1F10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2070622..2070725 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2070492..2070763 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGI19_RS10620 | 2067047..2067709 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| IGI19_RS10625 | 2067733..2068389 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| IGI19_RS10630 | 2068491..2068721 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IGI19_RS10635 | 2068860..2069234 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IGI19_RS10640 | 2069238..2070110 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| IGI19_RS10645 | 2070123..2070464 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2070492..2070763 | - | 272 | - | - | Antitoxin |
| - | 2070622..2070725 | + | 104 | - | - | Toxin |
| IGI19_RS10650 | 2070860..2071516 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| IGI19_RS10655 | 2071517..2071708 | - | 192 | WP_001338167.1 | YebW family protein | - |
| IGI19_RS10660 | 2071813..2072049 | - | 237 | WP_001338166.1 | YebV family protein | - |
| IGI19_RS10665 | 2072167..2073606 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203601 NZ_CP075462:2070622-2070725 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT203601 NZ_CP075462:c2070763-2070492 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
