Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2726726..2726871 | Replicon | chromosome |
| Accession | NZ_CP075113 | ||
| Organism | Salmonella enterica subsp. enterica serovar Dublin strain CFSAN059898 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2726728..2726831 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2726726..2726871 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO47_RS13385 | 2723606..2724436 | + | 831 | WP_001126030.1 | recombination protein RecT | - |
| CCO47_RS13390 | 2724483..2724668 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| CCO47_RS13395 | 2724767..2725195 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| CCO47_RS13400 | 2725256..2725534 | + | 279 | WP_001675651.1 | excisionase | - |
| CCO47_RS13405 | 2725509..2726588 | + | 1080 | WP_076031669.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2726726..2726871 | + | 146 | - | - | Antitoxin |
| - | 2726728..2726831 | - | 104 | - | - | Toxin |
| CCO47_RS13410 | 2726971..2727324 | - | 354 | WP_000722372.1 | YebY family protein | - |
| CCO47_RS13415 | 2727341..2728216 | - | 876 | WP_094912438.1 | copper homeostasis membrane protein CopD | - |
| CCO47_RS13420 | 2728217..2728591 | - | 375 | WP_000168392.1 | CopC domain-containing protein YobA | - |
| CCO47_RS13425 | 2728729..2728959 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| CCO47_RS13430 | 2729067..2729723 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| CCO47_RS13435 | 2729747..2730445 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 2645888..2734210 | 88322 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202933 NZ_CP075113:c2726831-2726728 [Salmonella enterica subsp. enterica serovar Dublin]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT202933 NZ_CP075113:2726726-2726871 [Salmonella enterica subsp. enterica serovar Dublin]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
