Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2679443..2679588 | Replicon | chromosome |
| Accession | NZ_CP074661 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN008104 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2679445..2679548 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2679443..2679588 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9D71_RS13050 | 2674643..2674861 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| A9D71_RS23105 | 2675163..2675261 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| A9D71_RS13060 | 2675580..2677559 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| A9D71_RS13065 | 2677973..2678251 | + | 279 | WP_001575998.1 | excisionase | - |
| A9D71_RS13070 | 2678226..2679305 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2679443..2679588 | + | 146 | - | - | Antitoxin |
| - | 2679445..2679548 | - | 104 | - | - | Toxin |
| A9D71_RS13075 | 2679688..2680041 | - | 354 | WP_000722370.1 | YebY family protein | - |
| A9D71_RS13080 | 2680058..2680933 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| A9D71_RS13085 | 2680934..2681308 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| A9D71_RS13090 | 2681446..2681676 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| A9D71_RS13095 | 2681784..2682440 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| A9D71_RS13100 | 2682464..2683162 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 2626974..2686927 | 59953 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202545 NZ_CP074661:c2679548-2679445 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT202545 NZ_CP074661:2679443-2679588 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
