Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2693489..2693634 | Replicon | chromosome |
| Accession | NZ_CP074428 | ||
| Organism | Salmonella sp. SJTUF14523 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2693491..2693594 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2693489..2693634 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFD69_RS13150 | 2688689..2688907 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| KFD69_RS23865 | 2689209..2689307 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| KFD69_RS13160 | 2689626..2691605 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| KFD69_RS13165 | 2692019..2692297 | + | 279 | WP_001575998.1 | excisionase | - |
| KFD69_RS13170 | 2692272..2693351 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2693489..2693634 | + | 146 | - | - | Antitoxin |
| - | 2693491..2693594 | - | 104 | - | - | Toxin |
| KFD69_RS13175 | 2693734..2694087 | - | 354 | WP_000722370.1 | YebY family protein | - |
| KFD69_RS13180 | 2694104..2694979 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| KFD69_RS13185 | 2694980..2695354 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| KFD69_RS13190 | 2695492..2695722 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| KFD69_RS13195 | 2695830..2696486 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| KFD69_RS13200 | 2696510..2697208 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 2639590..2715504 | 75914 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202114 NZ_CP074428:c2693594-2693491 [Salmonella sp. SJTUF14523]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT202114 NZ_CP074428:2693489-2693634 [Salmonella sp. SJTUF14523]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
