Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2953515..2953655 | Replicon | chromosome |
| Accession | NZ_CP074168 | ||
| Organism | Serratia ureilytica strain JBIWA004 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2953515..2953611 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2953515..2953655 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGP23_RS14000 (KGP23_13945) | 2949050..2949394 | + | 345 | WP_033642719.1 | hypothetical protein | - |
| KGP23_RS14005 (KGP23_13950) | 2949470..2949688 | + | 219 | WP_004940942.1 | hypothetical protein | - |
| KGP23_RS14010 (KGP23_13955) | 2949685..2950089 | - | 405 | WP_223524009.1 | hypothetical protein | - |
| KGP23_RS14015 (KGP23_13960) | 2950370..2951023 | + | 654 | WP_147837902.1 | hypothetical protein | - |
| KGP23_RS14020 (KGP23_13965) | 2951315..2951613 | - | 299 | Protein_2748 | transposase | - |
| KGP23_RS14025 (KGP23_13970) | 2951774..2952592 | - | 819 | WP_187181465.1 | DUF2971 domain-containing protein | - |
| KGP23_RS14030 (KGP23_13975) | 2952782..2953120 | - | 339 | WP_147837899.1 | DUF1367 family protein | - |
| KGP23_RS14035 (KGP23_13980) | 2953160..2953436 | + | 277 | Protein_2751 | tyrosine-type recombinase/integrase | - |
| - | 2953515..2953611 | - | 97 | - | - | Toxin |
| - | 2953515..2953655 | + | 141 | - | - | Antitoxin |
| KGP23_RS14040 (KGP23_13985) | 2953753..2954094 | - | 342 | WP_016928154.1 | YebY family protein | - |
| KGP23_RS14045 (KGP23_13990) | 2954164..2955045 | - | 882 | WP_033642717.1 | copper homeostasis membrane protein CopD | - |
| KGP23_RS14050 (KGP23_13995) | 2955048..2955431 | - | 384 | WP_004940886.1 | CopC domain-containing protein YobA | - |
| KGP23_RS14055 (KGP23_14000) | 2955758..2956276 | - | 519 | WP_033642716.1 | non-heme ferritin | - |
| KGP23_RS14060 (KGP23_14005) | 2956617..2956847 | + | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| KGP23_RS14065 (KGP23_14010) | 2956879..2957832 | - | 954 | WP_164057145.1 | prolyl aminopeptidase | - |
| KGP23_RS14070 (KGP23_14015) | 2958010..2958435 | - | 426 | WP_033652008.1 | RNA polymerase-binding protein DksA | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2951347..2951613 | 266 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T201721 NZ_CP074168:c2953611-2953515 [Serratia ureilytica]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT201721 NZ_CP074168:2953515-2953655 [Serratia ureilytica]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
