Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2357236..2357507 | Replicon | chromosome |
| Accession | NZ_CP074007 | ||
| Organism | Escherichia coli strain PD4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2357366..2357469 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2357236..2357507 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU74_RS11285 | 2353792..2354454 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFU74_RS11290 | 2354478..2355134 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU74_RS11295 | 2355236..2355466 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU74_RS11300 | 2355605..2355979 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| KFU74_RS11305 | 2355983..2356855 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| KFU74_RS11310 | 2356868..2357209 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2357236..2357507 | - | 272 | - | - | Antitoxin |
| - | 2357366..2357469 | + | 104 | - | - | Toxin |
| KFU74_RS11315 | 2357604..2358260 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KFU74_RS11320 | 2358261..2358452 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFU74_RS11325 | 2358557..2358793 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFU74_RS11330 | 2358911..2360350 | - | 1440 | WP_112916870.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201056 NZ_CP074007:2357366-2357469 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT201056 NZ_CP074007:c2357507-2357236 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
