Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1996118..1996389 | Replicon | chromosome |
| Accession | NZ_CP074001 | ||
| Organism | Escherichia coli strain PM4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1996248..1996351 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1996118..1996389 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU80_RS09680 | 1992673..1993335 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| KFU80_RS09685 | 1993359..1994015 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU80_RS09690 | 1994117..1994347 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU80_RS09695 | 1994486..1994860 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KFU80_RS09700 | 1994864..1995736 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| KFU80_RS09705 | 1995749..1996090 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1996118..1996389 | - | 272 | - | - | Antitoxin |
| - | 1996248..1996351 | + | 104 | - | - | Toxin |
| KFU80_RS09710 | 1996486..1997142 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| KFU80_RS09715 | 1997143..1997334 | - | 192 | WP_001338167.1 | YebW family protein | - |
| KFU80_RS09720 | 1997439..1997675 | - | 237 | WP_001338166.1 | YebV family protein | - |
| KFU80_RS09725 | 1997793..1999232 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201013 NZ_CP074001:1996248-1996351 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT201013 NZ_CP074001:c1996389-1996118 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
