Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3608735..3609006 | Replicon | chromosome |
| Accession | NZ_CP073981 | ||
| Organism | Escherichia coli strain MB19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3608865..3608968 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3608735..3609006 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU84_RS17205 | 3605290..3605952 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFU84_RS17210 | 3605976..3606632 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU84_RS17215 | 3606734..3606964 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU84_RS17220 | 3607103..3607477 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KFU84_RS17225 | 3607481..3608353 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| KFU84_RS17230 | 3608366..3608707 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3608735..3609006 | - | 272 | - | - | Antitoxin |
| - | 3608865..3608968 | + | 104 | - | - | Toxin |
| KFU84_RS17235 | 3609103..3609759 | + | 657 | WP_130060047.1 | protein-serine/threonine phosphatase | - |
| KFU84_RS17240 | 3609760..3609951 | - | 192 | WP_001338167.1 | YebW family protein | - |
| KFU84_RS17245 | 3610056..3610292 | - | 237 | WP_001338166.1 | YebV family protein | - |
| KFU84_RS17250 | 3610410..3611849 | - | 1440 | WP_032181738.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200895 NZ_CP073981:3608865-3608968 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT200895 NZ_CP073981:c3609006-3608735 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
