Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2038502..2038773 | Replicon | chromosome |
| Accession | NZ_CP073958 | ||
| Organism | Escherichia coli strain MB46 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2038632..2038735 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2038502..2038773 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU88_RS10020 | 2035057..2035719 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| KFU88_RS10025 | 2035743..2036399 | - | 657 | WP_001752600.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU88_RS10030 | 2036501..2036731 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU88_RS10035 | 2036870..2037244 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KFU88_RS10040 | 2037248..2038120 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| KFU88_RS10045 | 2038133..2038474 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2038502..2038773 | - | 272 | - | - | Antitoxin |
| - | 2038632..2038735 | + | 104 | - | - | Toxin |
| KFU88_RS10050 | 2038870..2039526 | + | 657 | WP_001752599.1 | protein-serine/threonine phosphatase | - |
| KFU88_RS10055 | 2039527..2039718 | - | 192 | WP_001338167.1 | YebW family protein | - |
| KFU88_RS10060 | 2039823..2040059 | - | 237 | WP_001338166.1 | YebV family protein | - |
| KFU88_RS10065 | 2040177..2041616 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200809 NZ_CP073958:2038632-2038735 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT200809 NZ_CP073958:c2038773-2038502 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
