Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1943960..1944231 | Replicon | chromosome |
| Accession | NZ_CP073943 | ||
| Organism | Escherichia coli strain MB52 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1944090..1944193 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1943960..1944231 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU89_RS09275 | 1940515..1941177 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFU89_RS09280 | 1941201..1941857 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU89_RS09285 | 1941959..1942189 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU89_RS09290 | 1942328..1942702 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KFU89_RS09295 | 1942706..1943578 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| KFU89_RS09300 | 1943591..1943932 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1943960..1944231 | - | 272 | - | - | Antitoxin |
| - | 1944090..1944193 | + | 104 | - | - | Toxin |
| KFU89_RS09305 | 1944328..1944984 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| KFU89_RS09310 | 1944985..1945176 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFU89_RS09315 | 1945281..1945517 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFU89_RS09320 | 1945635..1947074 | - | 1440 | WP_024174420.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200701 NZ_CP073943:1944090-1944193 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT200701 NZ_CP073943:c1944231-1943960 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
