Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2051245..2051516 | Replicon | chromosome |
| Accession | NZ_CP073929 | ||
| Organism | Escherichia coli strain MB64 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2051375..2051478 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2051245..2051516 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU91_RS09745 | 2047801..2048463 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFU91_RS09750 | 2048487..2049143 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU91_RS09755 | 2049245..2049475 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU91_RS09760 | 2049614..2049988 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| KFU91_RS09765 | 2049992..2050864 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| KFU91_RS09770 | 2050877..2051218 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2051245..2051516 | - | 272 | - | - | Antitoxin |
| - | 2051375..2051478 | + | 104 | - | - | Toxin |
| KFU91_RS09775 | 2051613..2052269 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KFU91_RS09780 | 2052270..2052461 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFU91_RS09785 | 2052566..2052802 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFU91_RS09790 | 2052920..2054359 | - | 1440 | WP_112916870.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200599 NZ_CP073929:2051375-2051478 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT200599 NZ_CP073929:c2051516-2051245 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
