Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3273042..3273189 | Replicon | chromosome |
| Accession | NZ_CP073791 | ||
| Organism | Klebsiella pneumoniae isolate KP_NORM_BLD_2010_71621 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3273046..3273148 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3273042..3273189 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFO61_RS16000 (KFO61_15995) | 3268570..3270003 | + | 1434 | WP_064183816.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KFO61_RS16005 (KFO61_16000) | 3270120..3270359 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KFO61_RS16010 (KFO61_16005) | 3270457..3270648 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KFO61_RS16015 (KFO61_16010) | 3270645..3271298 | - | 654 | WP_114446962.1 | protein-serine/threonine phosphatase | - |
| KFO61_RS16020 (KFO61_16015) | 3271455..3272423 | + | 969 | WP_142737047.1 | VirK/YbjX family protein | - |
| KFO61_RS16025 (KFO61_16020) | 3272524..3272667 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 3273042..3273189 | + | 148 | - | - | Antitoxin |
| - | 3273046..3273148 | - | 103 | - | - | Toxin |
| KFO61_RS16030 (KFO61_16025) | 3273306..3273644 | - | 339 | WP_002911404.1 | YebY family protein | - |
| KFO61_RS16035 (KFO61_16030) | 3273661..3274530 | - | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| KFO61_RS16040 (KFO61_16035) | 3274534..3274908 | - | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| KFO61_RS16045 (KFO61_16040) | 3275021..3275251 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KFO61_RS16050 (KFO61_16045) | 3275330..3275989 | + | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| KFO61_RS16055 (KFO61_16050) | 3275993..3278053 | - | 2061 | WP_004203388.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T200293 NZ_CP073791:c3273148-3273046 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT200293 NZ_CP073791:3273042-3273189 [Klebsiella pneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
