Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1894009..1894154 | Replicon | chromosome |
| Accession | NZ_CP073783 | ||
| Organism | Klebsiella pneumoniae isolate KP_NORM_BLD_2014_96855 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1894045..1894147 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1894009..1894154 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFO63_RS09065 (KFO63_09055) | 1889139..1891199 | + | 2061 | WP_069339950.1 | oligopeptidase B | - |
| KFO63_RS09070 (KFO63_09060) | 1891203..1891862 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KFO63_RS09075 (KFO63_09065) | 1891941..1892171 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KFO63_RS09080 (KFO63_09070) | 1892284..1892658 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KFO63_RS09085 (KFO63_09075) | 1892662..1893531 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| KFO63_RS09090 (KFO63_09080) | 1893548..1893886 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1894009..1894154 | - | 146 | - | - | Antitoxin |
| - | 1894045..1894147 | + | 103 | - | - | Toxin |
| KFO63_RS09095 (KFO63_09085) | 1894523..1894666 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| KFO63_RS09100 (KFO63_09090) | 1894771..1895739 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KFO63_RS09105 (KFO63_09095) | 1895896..1896549 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| KFO63_RS09110 (KFO63_09100) | 1896546..1896737 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KFO63_RS09115 (KFO63_09105) | 1896835..1897074 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KFO63_RS09120 (KFO63_09110) | 1897190..1898623 | - | 1434 | WP_069339948.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T200250 NZ_CP073783:1894045-1894147 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT200250 NZ_CP073783:c1894154-1894009 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
