Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2063844..2064115 | Replicon | chromosome |
| Accession | NZ_CP073719 | ||
| Organism | Escherichia coli strain CX12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2063974..2064077 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2063844..2064115 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6O05_RS10140 | 2060399..2061061 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J6O05_RS10145 | 2061085..2061741 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J6O05_RS10150 | 2061843..2062073 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J6O05_RS10155 | 2062212..2062586 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| J6O05_RS10160 | 2062590..2063462 | + | 873 | WP_057108027.1 | copper homeostasis membrane protein CopD | - |
| J6O05_RS10165 | 2063475..2063816 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2063844..2064115 | - | 272 | - | - | Antitoxin |
| - | 2063974..2064077 | + | 104 | - | - | Toxin |
| J6O05_RS10170 | 2064212..2064868 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| J6O05_RS10175 | 2064869..2065060 | - | 192 | WP_001313035.1 | YebW family protein | - |
| J6O05_RS10180 | 2065165..2065401 | - | 237 | WP_001295499.1 | YebV family protein | - |
| J6O05_RS10185 | 2065519..2066958 | - | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200112 NZ_CP073719:2063974-2064077 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT200112 NZ_CP073719:c2064115-2063844 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
