Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1673447..1673592 | Replicon | chromosome |
| Accession | NZ_CP073377 | ||
| Organism | Klebsiella sp. P1927 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1673483..1673585 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1673447..1673592 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KB892_RS08275 (KB892_08275) | 1668577..1670637 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KB892_RS08280 (KB892_08280) | 1670641..1671300 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KB892_RS08285 (KB892_08285) | 1671379..1671609 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KB892_RS08290 (KB892_08290) | 1671722..1672096 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KB892_RS08295 (KB892_08295) | 1672100..1672969 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| KB892_RS08300 (KB892_08300) | 1672986..1673324 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1673447..1673592 | - | 146 | - | - | Antitoxin |
| - | 1673483..1673585 | + | 103 | - | - | Toxin |
| KB892_RS08305 (KB892_08305) | 1673960..1674103 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KB892_RS08310 (KB892_08310) | 1674208..1675176 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KB892_RS08315 (KB892_08315) | 1675333..1675986 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| KB892_RS08320 (KB892_08320) | 1675983..1676174 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KB892_RS08325 (KB892_08325) | 1676272..1676511 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KB892_RS08330 (KB892_08330) | 1676627..1678060 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T199812 NZ_CP073377:1673483-1673585 [Klebsiella sp. P1927]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT199812 NZ_CP073377:c1673592-1673447 [Klebsiella sp. P1927]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
