Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5013924..5014069 | Replicon | chromosome |
| Accession | NZ_CP073373 | ||
| Organism | Klebsiella sp. P1954 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5013960..5014062 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5013924..5014069 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KB890_RS24045 | 5009054..5011114 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KB890_RS24050 | 5011118..5011777 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| KB890_RS24055 | 5011856..5012086 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KB890_RS24060 | 5012199..5012573 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KB890_RS24065 | 5012577..5013446 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| KB890_RS24070 | 5013463..5013801 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 5013924..5014069 | - | 146 | - | - | Antitoxin |
| - | 5013960..5014062 | + | 103 | - | - | Toxin |
| KB890_RS24075 | 5014438..5014581 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KB890_RS24080 | 5014686..5015654 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KB890_RS24085 | 5015811..5016464 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| KB890_RS24090 | 5016461..5016652 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KB890_RS24095 | 5016750..5016989 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KB890_RS24100 | 5017105..5018538 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T199793 NZ_CP073373:5013960-5014062 [Klebsiella sp. P1954]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT199793 NZ_CP073373:c5014069-5013924 [Klebsiella sp. P1954]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
