Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2901171..2901316 | Replicon | chromosome |
| Accession | NZ_CP072826 | ||
| Organism | Klebsiella pneumoniae strain IRQBAS105c | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2901207..2901309 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2901171..2901316 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9263_RS14210 | 2896301..2898361 | + | 2061 | WP_130947155.1 | oligopeptidase B | - |
| J9263_RS14215 | 2898365..2899024 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| J9263_RS14220 | 2899103..2899333 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| J9263_RS14225 | 2899446..2899820 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| J9263_RS14230 | 2899824..2900693 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| J9263_RS14235 | 2900710..2901048 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2901171..2901316 | - | 146 | - | - | Antitoxin |
| - | 2901207..2901309 | + | 103 | - | - | Toxin |
| J9263_RS14240 | 2901684..2901827 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| J9263_RS14245 | 2901932..2902900 | - | 969 | WP_206552288.1 | VirK/YbjX family protein | - |
| J9263_RS14250 | 2903057..2903710 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| J9263_RS14255 | 2903707..2903898 | - | 192 | WP_002911395.1 | YebW family protein | - |
| J9263_RS14260 | 2903996..2904235 | - | 240 | WP_002911393.1 | YebV family protein | - |
| J9263_RS14265 | 2904351..2905784 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T198948 NZ_CP072826:2901207-2901309 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT198948 NZ_CP072826:c2901316-2901171 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
