Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1949667..1949912 | Replicon | chromosome |
| Accession | NZ_CP072689 | ||
| Organism | Escherichia marmotae strain YF8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1949795..1949898 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1949667..1949912 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J8I93_RS09030 | 1946220..1946882 | - | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
| J8I93_RS09035 | 1946907..1947563 | - | 657 | WP_061090866.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J8I93_RS09040 | 1947664..1947894 | - | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| J8I93_RS09045 | 1948033..1948407 | + | 375 | WP_000168753.1 | CopC domain-containing protein YobA | - |
| J8I93_RS09050 | 1948411..1949283 | + | 873 | WP_061090867.1 | copper homeostasis membrane protein CopD | - |
| J8I93_RS09055 | 1949296..1949637 | + | 342 | WP_000976465.1 | YebY family protein | - |
| - | 1949667..1949912 | - | 246 | - | - | Antitoxin |
| - | 1949795..1949898 | + | 104 | - | - | Toxin |
| J8I93_RS09060 | 1950047..1950703 | + | 657 | WP_000806226.1 | protein-serine/threonine phosphatase | - |
| J8I93_RS09065 | 1950704..1950895 | - | 192 | WP_001516263.1 | YebW family protein | - |
| J8I93_RS09070 | 1951000..1951236 | - | 237 | WP_001516264.1 | YebV family protein | - |
| J8I93_RS09075 | 1951352..1952791 | - | 1440 | WP_192856039.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T198317 NZ_CP072689:1949795-1949898 [Escherichia marmotae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 246 bp
>AT198317 NZ_CP072689:c1949912-1949667 [Escherichia marmotae]
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCATTCTGGTGAAAGCACCCGGGCGG
TTTTTT
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCATTCTGGTGAAAGCACCCGGGCGG
TTTTTT
