Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3694726..3694866 | Replicon | chromosome |
| Accession | NZ_CP072199 | ||
| Organism | Serratia marcescens subsp. marcescens ATCC 13880 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3694770..3694866 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3694726..3694866 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6N75_RS17660 (J6N75_17660) | 3689994..3690389 | + | 396 | WP_033640666.1 | RidA family protein | - |
| J6N75_RS17665 (J6N75_17665) | 3690546..3691499 | + | 954 | WP_033641435.1 | prolyl aminopeptidase | - |
| J6N75_RS17670 (J6N75_17670) | 3691531..3691761 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| J6N75_RS17675 (J6N75_17675) | 3692106..3692624 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| J6N75_RS17680 (J6N75_17680) | 3692917..3693333 | + | 417 | WP_042706245.1 | CopC domain-containing protein YobA | - |
| J6N75_RS17685 (J6N75_17685) | 3693336..3694217 | + | 882 | WP_033640664.1 | copper homeostasis membrane protein CopD | - |
| J6N75_RS17690 (J6N75_17690) | 3694287..3694628 | + | 342 | WP_004940890.1 | YebY family protein | - |
| - | 3694726..3694866 | - | 141 | - | - | Antitoxin |
| - | 3694770..3694866 | + | 97 | - | - | Toxin |
| J6N75_RS17695 (J6N75_17695) | 3695118..3695522 | + | 405 | WP_033640663.1 | hypothetical protein | - |
| J6N75_RS17700 (J6N75_17700) | 3695519..3695737 | - | 219 | WP_033640661.1 | hypothetical protein | - |
| J6N75_RS17705 (J6N75_17705) | 3695812..3696162 | - | 351 | WP_033640660.1 | hypothetical protein | - |
| J6N75_RS17710 (J6N75_17710) | 3696411..3696761 | + | 351 | WP_033640658.1 | DUF4377 domain-containing protein | - |
| J6N75_RS17715 (J6N75_17715) | 3696945..3698144 | + | 1200 | WP_016928134.1 | trans-2-enoyl-CoA reductase family protein | - |
| J6N75_RS17720 (J6N75_17720) | 3698371..3698589 | + | 219 | WP_033640657.1 | hypothetical protein | - |
| J6N75_RS17725 (J6N75_17725) | 3698761..3699066 | + | 306 | WP_016928132.1 | hypothetical protein | - |
| J6N75_RS17730 (J6N75_17730) | 3699115..3699450 | + | 336 | WP_016928131.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T197481 NZ_CP072199:3694770-3694866 [Serratia marcescens subsp. marcescens ATCC 13880]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT197481 NZ_CP072199:c3694866-3694726 [Serratia marcescens subsp. marcescens ATCC 13880]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
