Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 937751..938022 | Replicon | chromosome |
| Accession | NZ_CP071441 | ||
| Organism | Escherichia coli strain EcPF20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 937789..937892 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 937751..938022 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J1F34_RS04510 | 934908..936347 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| J1F34_RS04515 | 936465..936701 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| J1F34_RS04520 | 936806..936997 | + | 192 | WP_001296140.1 | YebW family protein | - |
| J1F34_RS04525 | 936998..937654 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 937751..938022 | + | 272 | - | - | Antitoxin |
| - | 937789..937892 | - | 104 | - | - | Toxin |
| J1F34_RS04530 | 938050..938391 | - | 342 | WP_000976472.1 | YebY family protein | - |
| J1F34_RS04535 | 938404..939276 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| J1F34_RS04540 | 939280..939654 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| J1F34_RS04545 | 939793..940023 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J1F34_RS04550 | 940125..940781 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| J1F34_RS04555 | 940805..941467 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T196403 NZ_CP071441:c937892-937789 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT196403 NZ_CP071441:937751-938022 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
