Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 367138..367283 | Replicon | chromosome |
| Accession | NZ_CP070568 | ||
| Organism | Klebsiella pneumoniae strain KP51248 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 367174..367276 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 367138..367283 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JW300_RS02775 | 362268..364328 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JW300_RS02780 | 364332..364991 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JW300_RS02785 | 365070..365300 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JW300_RS02790 | 365413..365787 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JW300_RS02795 | 365791..366660 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| JW300_RS02800 | 366677..367015 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 367138..367283 | - | 146 | - | - | Antitoxin |
| - | 367174..367276 | + | 103 | - | - | Toxin |
| JW300_RS02805 | 367651..367794 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JW300_RS02810 | 367899..368867 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JW300_RS02815 | 369024..369677 | + | 654 | WP_032418800.1 | protein-serine/threonine phosphatase | - |
| JW300_RS02820 | 369674..369865 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JW300_RS02825 | 369963..370202 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JW300_RS02830 | 370318..371751 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T194354 NZ_CP070568:367174-367276 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT194354 NZ_CP070568:c367283-367138 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
