Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4112549..4112820 | Replicon | chromosome |
| Accession | NZ_CP070103 | ||
| Organism | Escherichia coli strain FDAARGOS_1277 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4112587..4112690 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4112549..4112820 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K07_RS19575 | 4109706..4111145 | + | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K07_RS19580 | 4111263..4111499 | + | 237 | WP_001338166.1 | YebV family protein | - |
| I6K07_RS19585 | 4111604..4111795 | + | 192 | WP_001338167.1 | YebW family protein | - |
| I6K07_RS19590 | 4111796..4112452 | - | 657 | WP_061349715.1 | protein-serine/threonine phosphatase | - |
| - | 4112549..4112820 | + | 272 | - | - | Antitoxin |
| - | 4112587..4112690 | - | 104 | - | - | Toxin |
| I6K07_RS19595 | 4112848..4113189 | - | 342 | WP_000976472.1 | YebY family protein | - |
| I6K07_RS19600 | 4113202..4114074 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| I6K07_RS19605 | 4114078..4114452 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| I6K07_RS19610 | 4114591..4114821 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K07_RS19615 | 4114923..4115579 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K07_RS19620 | 4115603..4116265 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T193128 NZ_CP070103:c4112690-4112587 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT193128 NZ_CP070103:4112549-4112820 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
