Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1984368..1984639 | Replicon | chromosome |
| Accession | NZ_CP070098 | ||
| Organism | Escherichia coli strain FDAARGOS_1370 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1984406..1984509 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1984368..1984639 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L00_RS10150 | 1981525..1982964 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6L00_RS10155 | 1983082..1983318 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6L00_RS10160 | 1983423..1983614 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6L00_RS10165 | 1983615..1984271 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 1984368..1984639 | + | 272 | - | - | Antitoxin |
| - | 1984406..1984509 | - | 104 | - | - | Toxin |
| I6L00_RS10170 | 1984667..1985008 | - | 342 | WP_001520705.1 | YebY family protein | - |
| I6L00_RS10175 | 1985021..1985893 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| I6L00_RS10180 | 1985897..1986271 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| I6L00_RS10185 | 1986410..1986640 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6L00_RS10190 | 1986742..1987398 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6L00_RS10195 | 1987422..1988084 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T193082 NZ_CP070098:c1984509-1984406 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT193082 NZ_CP070098:1984368-1984639 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
