Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4297099..4297370 | Replicon | chromosome |
| Accession | NZ_CP070077 | ||
| Organism | Escherichia coli strain FDAARGOS_1371 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4297229..4297332 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4297099..4297370 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L01_RS20205 | 4293654..4294316 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6L01_RS20210 | 4294340..4294996 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6L01_RS20215 | 4295098..4295328 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6L01_RS20220 | 4295467..4295841 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| I6L01_RS20225 | 4295845..4296717 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| I6L01_RS20230 | 4296730..4297071 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 4297099..4297370 | - | 272 | - | - | Antitoxin |
| - | 4297229..4297332 | + | 104 | - | - | Toxin |
| I6L01_RS20235 | 4297467..4298123 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| I6L01_RS20240 | 4298124..4298315 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6L01_RS20245 | 4298420..4298656 | - | 237 | WP_001295499.1 | YebV family protein | - |
| I6L01_RS20250 | 4298774..4300213 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T192994 NZ_CP070077:4297229-4297332 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT192994 NZ_CP070077:c4297370-4297099 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
