Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 994262..994530 | Replicon | chromosome |
| Accession | NZ_CP069978 | ||
| Organism | Escherichia coli strain FDAARGOS_1299 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 994390..994492 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 994262..994530 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K29_RS04600 | 990816..991478 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6K29_RS04605 | 991501..992157 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K29_RS04610 | 992259..992489 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K29_RS04615 | 992628..993002 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K29_RS04620 | 993006..993878 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6K29_RS04625 | 993891..994232 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 994262..994530 | - | 269 | - | - | Antitoxin |
| - | 994390..994492 | + | 103 | - | - | Toxin |
| I6K29_RS04630 | 994627..995283 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| I6K29_RS04635 | 995284..995475 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6K29_RS04640 | 995580..995816 | - | 237 | WP_001295499.1 | YebV family protein | - |
| I6K29_RS04645 | 995934..997373 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192433 NZ_CP069978:994390-994492 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT192433 NZ_CP069978:c994530-994262 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
