Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4530733..4530878 | Replicon | chromosome |
| Accession | NZ_CP069861 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1311 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4530740..4530842 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4530733..4530878 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K41_RS22090 | 4526264..4527697 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K41_RS22095 | 4527813..4528052 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I6K41_RS22100 | 4528150..4528341 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I6K41_RS22105 | 4528338..4528991 | - | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| I6K41_RS22110 | 4529148..4530116 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K41_RS22115 | 4530221..4530364 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4530733..4530878 | + | 146 | - | - | Antitoxin |
| - | 4530740..4530842 | - | 103 | - | - | Toxin |
| I6K41_RS22120 | 4531001..4531339 | - | 339 | WP_009307539.1 | YebY family protein | - |
| I6K41_RS22125 | 4531356..4532225 | - | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| I6K41_RS22130 | 4532229..4532603 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K41_RS22135 | 4532716..4532946 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K41_RS22140 | 4533025..4533684 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I6K41_RS22145 | 4533688..4535748 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T191934 NZ_CP069861:c4530842-4530740 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT191934 NZ_CP069861:4530733-4530878 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
