Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2000936..2001207 | Replicon | chromosome |
| Accession | NZ_CP069706 | ||
| Organism | Escherichia coli strain ECY44 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2001066..2001169 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2000936..2001207 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JR341_RS12700 | 1997491..1998153 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JR341_RS12705 | 1998177..1998833 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JR341_RS12710 | 1998935..1999165 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JR341_RS12715 | 1999304..1999678 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| JR341_RS12720 | 1999682..2000554 | + | 873 | WP_047662685.1 | copper homeostasis membrane protein CopD | - |
| JR341_RS12725 | 2000567..2000908 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2000936..2001207 | - | 272 | - | - | Antitoxin |
| - | 2001066..2001169 | + | 104 | - | - | Toxin |
| JR341_RS12730 | 2001304..2001960 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| JR341_RS12735 | 2001961..2002152 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JR341_RS12740 | 2002257..2002493 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JR341_RS12745 | 2002611..2004050 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T191662 NZ_CP069706:2001066-2001169 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT191662 NZ_CP069706:c2001207-2000936 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
