Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1073081..1073349 | Replicon | chromosome |
| Accession | NZ_CP069589 | ||
| Organism | Escherichia coli strain FDAARGOS_1266 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1073119..1073221 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1073081..1073349 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J96_RS05510 | 1070239..1071678 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6J96_RS05515 | 1071795..1072031 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J96_RS05520 | 1072136..1072327 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6J96_RS05525 | 1072328..1072984 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 1073081..1073349 | + | 269 | - | - | Antitoxin |
| - | 1073119..1073221 | - | 103 | - | - | Toxin |
| I6J96_RS05530 | 1073379..1073720 | - | 342 | WP_000976472.1 | YebY family protein | - |
| I6J96_RS05535 | 1073733..1074605 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| I6J96_RS05540 | 1074609..1074983 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J96_RS05545 | 1075122..1075352 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J96_RS05550 | 1075454..1076110 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| I6J96_RS05555 | 1076134..1076796 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T191040 NZ_CP069589:c1073221-1073119 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT191040 NZ_CP069589:1073081-1073349 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
