Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2552074..2552342 | Replicon | chromosome |
| Accession | NZ_CP069559 | ||
| Organism | Escherichia coli strain FDAARGOS_1259 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2552202..2552304 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2552074..2552342 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J89_RS12115 | 2548628..2549290 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6J89_RS12120 | 2549313..2549969 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| I6J89_RS12125 | 2550071..2550301 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J89_RS12130 | 2550440..2550814 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J89_RS12135 | 2550818..2551690 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| I6J89_RS12140 | 2551703..2552044 | + | 342 | WP_000977376.1 | YebY family protein | - |
| - | 2552074..2552342 | - | 269 | - | - | Antitoxin |
| - | 2552202..2552304 | + | 103 | - | - | Toxin |
| I6J89_RS12145 | 2552439..2553095 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| I6J89_RS12150 | 2553096..2553287 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6J89_RS12155 | 2553392..2553628 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J89_RS12160 | 2553746..2555185 | - | 1440 | WP_001467894.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T190904 NZ_CP069559:2552202-2552304 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT190904 NZ_CP069559:c2552342-2552074 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
