Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4902743..4903011 | Replicon | chromosome |
| Accession | NZ_CP069480 | ||
| Organism | Escherichia coli strain FDAARGOS_1257 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4902871..4902973 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4902743..4903011 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J87_RS23205 | 4899295..4899957 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6J87_RS23210 | 4899981..4900637 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| I6J87_RS23215 | 4900740..4900970 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J87_RS23220 | 4901109..4901483 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J87_RS23225 | 4901487..4902359 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| I6J87_RS23230 | 4902372..4902713 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 4902743..4903011 | - | 269 | - | - | Antitoxin |
| - | 4902871..4902973 | + | 103 | - | - | Toxin |
| I6J87_RS23235 | 4903108..4903764 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| I6J87_RS23240 | 4903765..4903956 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6J87_RS23245 | 4904061..4904297 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J87_RS23250 | 4904415..4905854 | - | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T190605 NZ_CP069480:4902871-4902973 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT190605 NZ_CP069480:c4903011-4902743 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
