Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2235503..2235774 | Replicon | chromosome |
| Accession | NZ_CP068826 | ||
| Organism | Escherichia coli strain RIVM_C030300 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2235633..2235736 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2235503..2235774 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN53_RS10645 | 2232058..2232720 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN53_RS10650 | 2232744..2233400 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN53_RS10655 | 2233502..2233732 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN53_RS10660 | 2233871..2234245 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN53_RS10665 | 2234249..2235121 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN53_RS10670 | 2235134..2235475 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2235503..2235774 | - | 272 | - | - | Antitoxin |
| - | 2235633..2235736 | + | 104 | - | - | Toxin |
| JNN53_RS10675 | 2235871..2236527 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN53_RS10680 | 2236528..2236719 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN53_RS10685 | 2236824..2237060 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN53_RS10690 | 2237178..2238617 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188645 NZ_CP068826:2235633-2235736 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188645 NZ_CP068826:c2235774-2235503 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
