Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 320856..321124 | Replicon | chromosome |
| Accession | NZ_CP068802 | ||
| Organism | Escherichia coli strain RIVM_C018249 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 320983..321086 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 320856..321124 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN40_RS01625 | 317409..318071 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN40_RS01630 | 318095..318751 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| JNN40_RS01635 | 318853..319083 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN40_RS01640 | 319222..319596 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN40_RS01645 | 319600..320472 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| JNN40_RS01650 | 320485..320826 | + | 342 | WP_000976485.1 | YebY family protein | - |
| - | 320856..321124 | - | 269 | - | - | Antitoxin |
| - | 320983..321086 | + | 104 | - | - | Toxin |
| JNN40_RS01655 | 321221..321877 | + | 657 | WP_001559255.1 | protein-serine/threonine phosphatase | - |
| JNN40_RS01660 | 321878..322069 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN40_RS01665 | 322174..322410 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN40_RS01670 | 322528..323967 | - | 1440 | WP_024186572.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187891 NZ_CP068802:320983-321086 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT187891 NZ_CP068802:c321124-320856 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
