Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2404608..2404753 | Replicon | chromosome |
| Accession | NZ_CP068386 | ||
| Organism | Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum strain R51 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2404648..2404751 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2404608..2404753 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JI728_RS11560 | 2401034..2401732 | - | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| JI728_RS11565 | 2401756..2402412 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| JI728_RS11570 | 2402520..2402750 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| JI728_RS11575 | 2402888..2403262 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| JI728_RS11580 | 2403263..2404138 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| JI728_RS11585 | 2404155..2404508 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 2404608..2404753 | - | 146 | - | - | Antitoxin |
| - | 2404648..2404751 | + | 104 | - | - | Toxin |
| JI728_RS11590 | 2404891..2405970 | - | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| JI728_RS11595 | 2405945..2406223 | - | 279 | WP_001575998.1 | excisionase | - |
| JI728_RS11600 | 2406284..2406712 | - | 429 | WP_000743301.1 | hypothetical protein | - |
| JI728_RS11605 | 2406811..2406996 | - | 186 | WP_000280163.1 | DUF1187 family protein | - |
| JI728_RS11610 | 2407043..2407873 | - | 831 | WP_120116495.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187166 NZ_CP068386:2404648-2404751 [Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT187166 NZ_CP068386:c2404753-2404608 [Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
