Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1738030..1738170 | Replicon | chromosome |
| Accession | NZ_CP068214 | ||
| Organism | Serratia ureilytica strain FDAARGOS_1089 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1738074..1738170 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1738030..1738170 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I46_RS08495 | 1733234..1733659 | + | 426 | WP_049203468.1 | RNA polymerase-binding protein DksA | - |
| I6I46_RS08500 | 1733854..1734807 | + | 954 | WP_033644252.1 | prolyl aminopeptidase | - |
| I6I46_RS08505 | 1734838..1735068 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| I6I46_RS08510 | 1735409..1735927 | + | 519 | WP_033642716.1 | non-heme ferritin | - |
| I6I46_RS08515 | 1736221..1736637 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| I6I46_RS08520 | 1736640..1737521 | + | 882 | WP_164120395.1 | copper homeostasis membrane protein CopD | - |
| I6I46_RS08525 | 1737591..1737932 | + | 342 | WP_016928154.1 | YebY family protein | - |
| - | 1738030..1738170 | - | 141 | - | - | Antitoxin |
| - | 1738074..1738170 | + | 97 | - | - | Toxin |
| I6I46_RS08530 | 1738423..1738827 | + | 405 | WP_046686877.1 | hypothetical protein | - |
| I6I46_RS08535 | 1738824..1739042 | - | 219 | WP_004940942.1 | hypothetical protein | - |
| I6I46_RS08540 | 1739117..1739461 | - | 345 | WP_033642719.1 | hypothetical protein | - |
| I6I46_RS08545 | 1739710..1740060 | + | 351 | WP_004940949.1 | DUF4377 domain-containing protein | - |
| I6I46_RS08550 | 1740111..1740413 | - | 303 | WP_016928136.1 | hypothetical protein | - |
| I6I46_RS08555 | 1740413..1741189 | - | 777 | WP_157993238.1 | DUF4225 domain-containing protein | - |
| I6I46_RS08560 | 1741466..1742665 | + | 1200 | WP_033652019.1 | trans-2-enoyl-CoA reductase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T186841 NZ_CP068214:1738074-1738170 [Serratia ureilytica]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT186841 NZ_CP068214:c1738170-1738030 [Serratia ureilytica]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
