Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4329878..4330149 | Replicon | chromosome |
| Accession | NZ_CP068155 | ||
| Organism | Escherichia coli strain FDAARGOS_1077 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4330008..4330111 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4329878..4330149 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I34_RS22105 | 4326433..4327095 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| I6I34_RS22110 | 4327119..4327775 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| I6I34_RS22115 | 4327877..4328107 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6I34_RS22120 | 4328246..4328620 | + | 375 | WP_000168746.1 | CopC domain-containing protein YobA | - |
| I6I34_RS22125 | 4328624..4329496 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| I6I34_RS22130 | 4329509..4329850 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4329878..4330149 | - | 272 | - | - | Antitoxin |
| - | 4330008..4330111 | + | 104 | - | - | Toxin |
| I6I34_RS22135 | 4330246..4330902 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| I6I34_RS22140 | 4330903..4331094 | - | 192 | WP_001338167.1 | YebW family protein | - |
| I6I34_RS22145 | 4331199..4331435 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| I6I34_RS22150 | 4331553..4332992 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T186788 NZ_CP068155:4330008-4330111 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT186788 NZ_CP068155:c4330149-4329878 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
