Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3808044..3808162 | Replicon | chromosome |
| Accession | NZ_CP068146 | ||
| Organism | Yersinia enterocolitica strain FDAARGOS_1082 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3808066..3808160 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3808044..3808162 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I39_RS16910 | 3803659..3804615 | + | 957 | WP_005163605.1 | prolyl aminopeptidase | - |
| I6I39_RS16915 | 3804665..3804898 | - | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| I6I39_RS16920 | 3805281..3805790 | + | 510 | WP_005163604.1 | non-heme ferritin | - |
| I6I39_RS16925 | 3806181..3806567 | + | 387 | WP_005163603.1 | CopC domain-containing protein YobA | - |
| I6I39_RS16930 | 3806569..3807453 | + | 885 | WP_005163602.1 | copper homeostasis membrane protein CopD | - |
| I6I39_RS16935 | 3807550..3807891 | + | 342 | WP_005163587.1 | YebY family protein | - |
| - | 3808044..3808162 | - | 119 | - | - | Antitoxin |
| - | 3808066..3808160 | + | 95 | - | - | Toxin |
| I6I39_RS16940 | 3808218..3809288 | - | 1071 | WP_023161015.1 | tyrosine-type recombinase/integrase | - |
| I6I39_RS16945 | 3809529..3810344 | + | 816 | WP_005163581.1 | hypothetical protein | - |
| I6I39_RS16950 | 3810429..3810650 | - | 222 | WP_005163580.1 | DNA-binding transcriptional regulator | - |
| I6I39_RS16955 | 3810743..3811885 | - | 1143 | WP_005163579.1 | phage late control D family protein | - |
| I6I39_RS16960 | 3811882..3812334 | - | 453 | WP_005163578.1 | phage tail protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | ystA | 3709232..3948601 | 239369 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T186710 NZ_CP068146:3808066-3808160 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT186710 NZ_CP068146:c3808162-3808044 [Yersinia enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
