Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1910094..1910241 | Replicon | chromosome |
| Accession | NZ_CP067966 | ||
| Organism | Klebsiella quasipneumoniae strain ARLG-8054 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1910135..1910237 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1910094..1910241 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJ669_RS09290 | 1905229..1907289 | + | 2061 | WP_048297811.1 | oligopeptidase B | - |
| JJ669_RS09295 | 1907293..1907952 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| JJ669_RS09300 | 1908031..1908261 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JJ669_RS09305 | 1908374..1908748 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| JJ669_RS09310 | 1908752..1909621 | + | 870 | WP_048297809.1 | copper homeostasis membrane protein CopD | - |
| JJ669_RS09315 | 1909638..1909976 | + | 339 | WP_050533809.1 | YebY family protein | - |
| - | 1910094..1910241 | - | 148 | - | - | Antitoxin |
| - | 1910135..1910237 | + | 103 | - | - | Toxin |
| JJ669_RS09320 | 1910616..1910759 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| JJ669_RS09325 | 1910860..1911828 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| JJ669_RS09330 | 1911985..1912638 | + | 654 | WP_240247545.1 | protein-serine/threonine phosphatase | - |
| JJ669_RS09335 | 1912635..1912826 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JJ669_RS09340 | 1912924..1913163 | - | 240 | WP_044523970.1 | YebV family protein | - |
| JJ669_RS09345 | 1913279..1914709 | - | 1431 | WP_044523969.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T186365 NZ_CP067966:1910135-1910237 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT186365 NZ_CP067966:c1910241-1910094 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
