Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2123878..2124046 | Replicon | chromosome |
| Accession | NZ_CP067391 | ||
| Organism | Klebsiella grimontii strain 5512.56 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2123936..2124039 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2123878..2124046 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJJ11_RS12395 (JJJ11_12395) | 2119005..2121065 | + | 2061 | WP_209574004.1 | oligopeptidase B | - |
| JJJ11_RS12400 (JJJ11_12400) | 2121072..2121731 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| JJJ11_RS12405 (JJJ11_12405) | 2121810..2122040 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| JJJ11_RS12410 (JJJ11_12410) | 2122176..2122550 | + | 375 | WP_004134817.1 | CopC domain-containing protein YobA | - |
| JJJ11_RS12415 (JJJ11_12415) | 2122555..2123424 | + | 870 | WP_209574006.1 | copper homeostasis membrane protein CopD | - |
| JJJ11_RS12420 (JJJ11_12420) | 2123441..2123779 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2123878..2124046 | - | 169 | - | - | Antitoxin |
| - | 2123936..2124039 | + | 104 | - | - | Toxin |
| JJJ11_RS12425 (JJJ11_12425) | 2124164..2125123 | - | 960 | WP_209574007.1 | spore coat protein U domain-containing protein | - |
| JJJ11_RS12430 (JJJ11_12430) | 2125138..2127468 | - | 2331 | WP_049089570.1 | fimbria/pilus outer membrane usher protein | - |
| JJJ11_RS12435 (JJJ11_12435) | 2127471..2128235 | - | 765 | WP_004134823.1 | fimbria/pilus periplasmic chaperone | - |
| JJJ11_RS12440 (JJJ11_12440) | 2128254..2128772 | - | 519 | WP_209574009.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T186224 NZ_CP067391:2123936-2124039 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT186224 NZ_CP067391:c2124046-2123878 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
