Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2818158..2818429 | Replicon | chromosome |
| Accession | NZ_CP067241 | ||
| Organism | Escherichia coli strain P19_598 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2818196..2818298 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2818158..2818429 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB18_RS13170 | 2815315..2816754 | + | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JJB18_RS13175 | 2816872..2817108 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JJB18_RS13180 | 2817213..2817404 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JJB18_RS13185 | 2817405..2818061 | - | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| - | 2818158..2818429 | + | 272 | - | - | Antitoxin |
| - | 2818196..2818298 | - | 103 | - | - | Toxin |
| JJB18_RS13190 | 2818457..2818798 | - | 342 | WP_000976484.1 | YebY family protein | - |
| JJB18_RS13195 | 2818811..2819683 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| JJB18_RS13200 | 2819687..2820061 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| JJB18_RS13205 | 2820200..2820430 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JJB18_RS13210 | 2820532..2821188 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JJB18_RS13215 | 2821212..2821874 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T185854 NZ_CP067241:c2818298-2818196 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT185854 NZ_CP067241:2818158-2818429 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
