Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2076982..2077148 | Replicon | chromosome |
| Accession | NZ_CP067066 | ||
| Organism | Raoultella sp. XY-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2077040..2077143 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2076982..2077148 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGY86_RS09810 | 2072120..2074180 | + | 2061 | WP_044350916.1 | oligopeptidase B | - |
| JGY86_RS09815 | 2074186..2074845 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| JGY86_RS09820 | 2074924..2075154 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| JGY86_RS09825 | 2075281..2075655 | + | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| JGY86_RS09830 | 2075659..2076528 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| JGY86_RS09835 | 2076545..2076883 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 2076982..2077148 | - | 167 | - | - | Antitoxin |
| - | 2077040..2077143 | + | 104 | - | - | Toxin |
| JGY86_RS09840 | 2077453..2077596 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| JGY86_RS09845 | 2077717..2078688 | - | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| JGY86_RS09850 | 2078831..2079475 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| JGY86_RS09855 | 2079481..2079672 | - | 192 | WP_004863962.1 | YebW family protein | - |
| JGY86_RS09860 | 2079766..2080005 | - | 240 | WP_004863958.1 | YebV family protein | - |
| JGY86_RS09865 | 2080120..2081553 | - | 1434 | WP_032717103.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T185674 NZ_CP067066:2077040-2077143 [Raoultella sp. XY-1]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT185674 NZ_CP067066:c2077148-2076982 [Raoultella sp. XY-1]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
