Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1920014..1920159 | Replicon | chromosome |
| Accession | NZ_CP067045 | ||
| Organism | Klebsiella pneumoniae strain B6753 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1920050..1920152 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1920014..1920159 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IL988_RS09365 | 1915144..1917204 | + | 2061 | WP_049181698.1 | oligopeptidase B | - |
| IL988_RS09370 | 1917208..1917867 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IL988_RS09375 | 1917946..1918176 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IL988_RS09380 | 1918289..1918663 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IL988_RS09385 | 1918667..1919536 | + | 870 | WP_049181704.1 | copper homeostasis membrane protein CopD | - |
| IL988_RS09390 | 1919553..1919891 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1920014..1920159 | - | 146 | - | - | Antitoxin |
| - | 1920050..1920152 | + | 103 | - | - | Toxin |
| IL988_RS09395 | 1920528..1920671 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IL988_RS09400 | 1920776..1921744 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| IL988_RS09405 | 1921901..1922554 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| IL988_RS09410 | 1922551..1922742 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IL988_RS09415 | 1922840..1923079 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IL988_RS09420 | 1923195..1924628 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T185617 NZ_CP067045:1920050-1920152 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT185617 NZ_CP067045:c1920159-1920014 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
