Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | pemIK/MazF(toxin) |
| Location | 1397816..1398458 | Replicon | chromosome |
| Accession | NZ_CP066194 | ||
| Organism | Bacillus cytotoxicus strain E8.1 | ||
Toxin (Protein)
| Gene name | pemK | Uniprot ID | J8CWW5 |
| Locus tag | JC776_RS06900 | Protein ID | WP_000635963.1 |
| Coordinates | 1397816..1398166 (-) | Length | 117 a.a. |
Antitoxin (Protein)
| Gene name | pemI | Uniprot ID | R8PTJ6 |
| Locus tag | JC776_RS06905 | Protein ID | WP_000004571.1 |
| Coordinates | 1398171..1398458 (-) | Length | 96 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JC776_RS06885 (JC776_06885) | 1394524..1394988 | - | 465 | WP_011983367.1 | SprT family protein | - |
| JC776_RS06890 (JC776_06890) | 1395375..1395509 | + | 135 | WP_087094358.1 | cortex morphogenetic protein CmpA | - |
| JC776_RS06895 (JC776_06895) | 1395583..1397751 | - | 2169 | WP_048721313.1 | Tex family protein | - |
| JC776_RS06900 (JC776_06900) | 1397816..1398166 | - | 351 | WP_000635963.1 | type II toxin-antitoxin system endoribonuclease NdoA | Toxin |
| JC776_RS06905 (JC776_06905) | 1398171..1398458 | - | 288 | WP_000004571.1 | antitoxin EndoAI | Antitoxin |
| JC776_RS06910 (JC776_06910) | 1398672..1399841 | - | 1170 | WP_011983365.1 | alanine racemase | - |
| JC776_RS06915 (JC776_06915) | 1399963..1400913 | - | 951 | WP_041810183.1 | outer membrane lipoprotein carrier protein LolA | - |
| JC776_RS06920 (JC776_06920) | 1401069..1401428 | - | 360 | WP_011983363.1 | holo-ACP synthase | - |
| JC776_RS06925 (JC776_06925) | 1401519..1402079 | + | 561 | WP_048721301.1 | rhomboid family intramembrane serine protease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 117 a.a. Molecular weight: 12974.12 Da Isoelectric Point: 5.7168
>T184160 WP_000635963.1 NZ_CP066194:c1398166-1397816 [Bacillus cytotoxicus]
MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAKKYGFERDSVILLEQI
RTIDKQRLTDKITHLDEVMMIRVDEALQISLGLIDF
MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAKKYGFERDSVILLEQI
RTIDKQRLTDKITHLDEVMMIRVDEALQISLGLIDF
Download Length: 351 bp
>T184160 NZ_CP087392:333509-334396 [Pectobacterium parvum]
ATGCTGAAGCAACAAATTCGCCAAATTGTCCAGTCAAACCCTGACTATGCCGCAGTGACACCCGTCATAGAAAAAGAGAT
CTTGCATCATGACATTATGGATGTGCTGATCAAACAGGGCGTCATGCAGCGGTTAACGTTCATTGGCGGCACCTCATTAC
GAATGTGTTACAACAGCAGCAGGCTATCAGAAGATCTTGATTTCAATGGTGGTCATGATTTCAAGCCCTCAGCGTTTGAG
GGGCTGGAGTCCGAAATCCAAACCTATATTCAGAACAAGTATGAAACCGAGGTTTGGGTAAACAAACCTTCTGGCGAGCA
GCAAGGGGATACCGTTTCTTGGAAAATTAGTATCGTAAAAGAAGCTAATCGTCCTGATTTTCCTCGGCAAAAAATGCATA
TTGACGTCTGTGCTATTCCGTCATTTGATATTGAAAAGCGCCCGCTAATCAATCATTACGACATTGTTGTACCGACTGAA
GGGATCTTGGTTCCGGTACAGTCGTTACAAGAAACATTGGCTGATAAGCTGATCGCGTTAGCGTATCGGGCAAGACGTAT
TAAACCTCGTGATATCTGGGATATTATTTGGATTAAGCAGCGCGGTATTGATTTATCCAAGACACTGGTTGAAAAGAAGC
TCACCGCCAGACAGAAGCAAATAGAAGACTTTCGACAGGCGTTGTCTATTCAGTTAGCCAAGCTAATGTCGGAAGATGAA
GTCCGTGACGACTTCAATATGGAAATGAGCCGCTTTATCCCTAAGCCAATTAAAGAGAGAACTCTCGATAATCCTGAATA
TTGGGCTTATGTTCAAGGCGAGGTGCATGCCATCGCGTCTGAGTTACTGAATGACGGAATACCAAAAAATCCATTTGATA
TGGGTTAG
ATGCTGAAGCAACAAATTCGCCAAATTGTCCAGTCAAACCCTGACTATGCCGCAGTGACACCCGTCATAGAAAAAGAGAT
CTTGCATCATGACATTATGGATGTGCTGATCAAACAGGGCGTCATGCAGCGGTTAACGTTCATTGGCGGCACCTCATTAC
GAATGTGTTACAACAGCAGCAGGCTATCAGAAGATCTTGATTTCAATGGTGGTCATGATTTCAAGCCCTCAGCGTTTGAG
GGGCTGGAGTCCGAAATCCAAACCTATATTCAGAACAAGTATGAAACCGAGGTTTGGGTAAACAAACCTTCTGGCGAGCA
GCAAGGGGATACCGTTTCTTGGAAAATTAGTATCGTAAAAGAAGCTAATCGTCCTGATTTTCCTCGGCAAAAAATGCATA
TTGACGTCTGTGCTATTCCGTCATTTGATATTGAAAAGCGCCCGCTAATCAATCATTACGACATTGTTGTACCGACTGAA
GGGATCTTGGTTCCGGTACAGTCGTTACAAGAAACATTGGCTGATAAGCTGATCGCGTTAGCGTATCGGGCAAGACGTAT
TAAACCTCGTGATATCTGGGATATTATTTGGATTAAGCAGCGCGGTATTGATTTATCCAAGACACTGGTTGAAAAGAAGC
TCACCGCCAGACAGAAGCAAATAGAAGACTTTCGACAGGCGTTGTCTATTCAGTTAGCCAAGCTAATGTCGGAAGATGAA
GTCCGTGACGACTTCAATATGGAAATGAGCCGCTTTATCCCTAAGCCAATTAAAGAGAGAACTCTCGATAATCCTGAATA
TTGGGCTTATGTTCAAGGCGAGGTGCATGCCATCGCGTCTGAGTTACTGAATGACGGAATACCAAAAAATCCATTTGATA
TGGGTTAG
Antitoxin
Download Length: 96 a.a. Molecular weight: 10748.30 Da Isoelectric Point: 8.9605
>AT184160 WP_000004571.1 NZ_CP066194:c1398458-1398171 [Bacillus cytotoxicus]
VSESSVTTEIVVRLPKQVVTELDGIGKQENKNRHELICQATQLLLRQHKTKKRYQHESMRRGYIEMGKINLGIASEAFLA
EYEAAHTVERLVSGG
VSESSVTTEIVVRLPKQVVTELDGIGKQENKNRHELICQATQLLLRQHKTKKRYQHESMRRGYIEMGKINLGIASEAFLA
EYEAAHTVERLVSGG
Download Length: 288 bp
>AT184160 NZ_CP087392:332956-333480 [Pectobacterium parvum]
ATGGCTAAATCTGATGAGCTATTAAACGCGTTGGCCAAAGCAGTGAACGCCGGTGGCGGCATTCACAGTGTAACAGAGCT
GGCTTTTATGCAGGGTGTGCCTTGTGACTCAGCCTTTAGAAAATTCCTGGCAGATTGCGTAAAGAAGGGGTTGCTAAGAC
GAGTGGTGAAAGGCTTCTATGAAAGTGTTATTACACCACCTGAGCCTGAGACTGCCATTTATAAAATCATCAAAAAGTTG
CGCAGCAGCGTATTGAGCTACATCAGCTTAGAAAGTCAGCTCAGTCATACCGGTGATATTTCACAAGTTGTGATGGGTAG
AGTCACTGTGGTGACTAAAGGTCGAAGTGGTTGTTTTGATACGCCTTATGGCGTGATCGAGTTTACCCATACTAAAAAGC
CAGTCGAGCAAATTGCACCTAATTTGTATTATGACCCCGACATCAAAATGTATCGCGCATACAAGGAACAAGCGATTGCA
GATCTAAAACACTGCCAGCGCAATCTACATATGTTGGAGAGCTAA
ATGGCTAAATCTGATGAGCTATTAAACGCGTTGGCCAAAGCAGTGAACGCCGGTGGCGGCATTCACAGTGTAACAGAGCT
GGCTTTTATGCAGGGTGTGCCTTGTGACTCAGCCTTTAGAAAATTCCTGGCAGATTGCGTAAAGAAGGGGTTGCTAAGAC
GAGTGGTGAAAGGCTTCTATGAAAGTGTTATTACACCACCTGAGCCTGAGACTGCCATTTATAAAATCATCAAAAAGTTG
CGCAGCAGCGTATTGAGCTACATCAGCTTAGAAAGTCAGCTCAGTCATACCGGTGATATTTCACAAGTTGTGATGGGTAG
AGTCACTGTGGTGACTAAAGGTCGAAGTGGTTGTTTTGATACGCCTTATGGCGTGATCGAGTTTACCCATACTAAAAAGC
CAGTCGAGCAAATTGCACCTAATTTGTATTATGACCCCGACATCAAAATGTATCGCGCATACAAGGAACAAGCGATTGCA
GATCTAAAACACTGCCAGCGCAATCTACATATGTTGGAGAGCTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|